Scaffold Ga0079046_1004410

Overview

Basic Information

• Taxon OID: 3300006859
• Scaffold ID: Ga0079046_1004410
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_host_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2802
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F063848	Metagenome / Metatranscriptome	129	N
F085905	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079046_10044101	F061983	AGGAGG	LKKYVFKVKVVQIKLVNEEGVLSEQEFEHVKKTRIYKGMKVLEIKDLGFDSFWRFTHYYELVAISEGDGLFDCYYSDVIDVKKLKDVGAIVVKENDSEPVRTMKTLVARWYNKKLVEEEKAFETCTKFIM*
Ga0079046_10044103	F085905	GGAGG	LSFPSSRLSQFDYVGMNAYWLNTRLRYFTDPMLYAVATGIWVINLMDDVDIAETGTEKNFEYGLIYVYSNSRIDTLFIVALTHYFNVKREREYYRSIPMDALQNVMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVMARYLLPYSVLEVIRRHLKK*
Ga0079046_10044104	F063848	N/A	VAKKRRSVHDPTLSVIHYQEQLEKMSKAYEKSSTRRNQRAVNGFTVLKQVQNTVRDYLNEVSASMKAPVIAQLAVEFIGIAMAYLKGSNEGYNSYALTGRVAQIATLRATHIVHATTLTCAQVGEIINGMLKKLSGVTADPLTFTENDGVCEAKVANPLTKLSVASASTGYTVALTDILKAKTPEEVLMAK*