Scaffold Ga0075425_100142135

Overview

Basic Information

• Taxon OID: 3300006854
• Scaffold ID: Ga0075425_100142135
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2747
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011259	Metagenome / Metatranscriptome	293	Y
F037883	Metagenome / Metatranscriptome	167	Y
F070583	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075425_1001421353	F070583	AGGAG	MNDNNRVLARNGARELNREETERVSGGLTTLTACTWDPDFGRDGDGPPEC*
Ga0075425_1001421354	F011259	AGGAG	MQQEDTRVLCRKGARELTIEEVDFVSAAVAAHTNVCTAIMATATATGPGDGDGCSDTDKDAHFI*
Ga0075425_1001421355	F037883	AGGAGG	MPNQNESGRVLNRLGAREVSGEEIERVSAGSGPPCRLTFTHLPKGGSDEDTQCP*