NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075425_100030192

Scaffold Ga0075425_100030192


Overview

Basic Information
Taxon OID3300006854 Open in IMG/M
Scaffold IDGa0075425_100030192 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6008
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002645Metagenome / Metatranscriptome540Y
F014557Metagenome / Metatranscriptome262Y
F104696Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0075425_10003019210F014557AGGCGGMRAQRRFDADVARAMTRRTFLAHLARASSAAILASSSTGCGAVRGAIERARAVDAVPIFNPVQREVVAKIIDGFNPPDTEIRRRLEQDDPDYDPAAVYAEFAWASGDEFLNRMKSLLDFLNALPTFTRTFSTRHGLPARLQLQHFHPDDANRYFLYLRDSNIRALRNLFSGAKFIGTAPLYTNEKVVWKAMSYPGPWLLDPAKPK
Ga0075425_1000301924F002645AGGAGMAAMGLRSLSTVLGVTIMIGLAASLAGCASVGPVTTVSVPDIKSVTGTWKGIVYRSGGEPENITMTIREDGTYDVVSVDKVGASRGSGKIVISDGRLVIEGERGRGVGTLARNPGGDLVMSVDATLNDNSTLSAKLWPSR*
Ga0075425_1000301929F104696GAGGMLRIGGTARSLLVVSLAVAIAGCVLFGRSSTRPDPEAVSGPAPYVENCATCHAGPIATHYAESRHAAEGIRCGQCHTAGGHPNFSEPVADGKCGGCHQPQYQQTLLNKHFATRVQRSLDDNRAARASLRRDGFTATVENARRFVGDAASTELGGRLCAACHYDDHRLGLVAVRQPSFCVGCHRDREQHYAAGPAPAAQNRCIVCHIRIGTTVAGQVVNTHRFAVPGTEGGGR*
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