Scaffold Ga0075425_100023031

Overview

Basic Information

• Taxon OID: 3300006854
• Scaffold ID: Ga0075425_100023031
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6843
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010020	Metagenome / Metatranscriptome	309	Y
F029598	Metagenome	188	Y
F045042	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075425_1000230314	F045042	GAGG	VRRSPVALPMLMVAALAGCVAPRTPPPMPGTGWGYVGEPRSGTGARRVFYTPDRYICEKSRHEDTSADFTAPPACVQLTISRGAGYWLIPALYLPTGSYIGGSTREECEAMERRQTRNLPVSPRGFCQSAAVQPTP*
Ga0075425_1000230318	F010020	N/A	MREIQTLPEGTRVIVVWAEGNDGPHEYRVHWRRGEPYAQTDDDHRRGHVDLEKWLTYYIGPRRPFTRVWALTA*
Ga0075425_1000230319	F029598	AGGGGG	VWRLRLSWVVLVVACSGCATQAGVSTSDVQAVAKGNRVTLLVLGTGNKWAPRTEPDLYMVVQAPHPAAPEKVQTDLSECQAAARTVWNSDRAERDRTILVNEGPAYNPGAQVSRAAMDLLAKTYGDCLQPKGYMASRPEPNG*