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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006852 Open in IMG/M |
| Scaffold ID | Ga0075433_10074749 Open in IMG/M |
| Source Dataset Name | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2982 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Tennessee | |||||||
| Coordinates | Lat. (o) | 35.8444 | Long. (o) | -83.9599 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014275 | Metagenome / Metatranscriptome | 264 | Y |
| F015750 | Metagenome / Metatranscriptome | 252 | Y |
| F016870 | Metagenome / Metatranscriptome | 244 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0075433_100747492 | F015750 | N/A | MDFGTIRQTIRRKLESGRLPLERAARVFGRSPSGEACDGCDMTIETGQLAMDGLARAPGRRAVRLHLRCFEIWAQERSSLVRERRQPA* |
| Ga0075433_100747494 | F014275 | AGGAGG | MHKLVVKLDRAGAGNHVSRWKRHMDQQIRRAVKASRRAIHASNHSASPHKAERVALKMKKAVVKAAMGL* |
| Ga0075433_100747496 | F016870 | N/A | GSFFARLAIFGWFRVGVRATNREERATMYDRTIDRMSDSASEFLVQFYLHSPKLSVTVLLAAWLLLFFTALWYFVLLPATSNNLVNGSFEARLVGWGTGWLEDFPAYRGAARLNQYLATRNSQTGQLAVADWRSDPTEHRPGGRFALLVEHRSDKQTEVYSTLAQRIRVKPRTGYHVRFWAKVDRMEHDGDLWLSPNGGSVAWDEPKVEVAGAGKGWQFYKLDFNSGDRTDLDIRFVAEGPLKAWIDDVVVSRVPASETWVEKAGSWLRSLWNILR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |