NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075421_100081686

Scaffold Ga0075421_100081686


Overview

Basic Information
Taxon OID3300006845 Open in IMG/M
Scaffold IDGa0075421_100081686 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4077
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032948Metagenome / Metatranscriptome178N
F055120Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0075421_1000816861F055120N/AMNTESKDLPDAKTLFERMCIDGTRFQAHKFISAVESYDGLREAAEEGRQITANYLPLLSDVFSAFFQNKARLKQNPPRETEENREIMETALGLKEYEELHTVSRLDFFASAAATRAFSHQLIKLLKEKKEEDKKEPERGKADKGALGVDPDTLRWAIRRSLKKGLAEAQEAKQAVETFGREEGGIQRIPLNEQFRLADLLGKNAKIKQIVKMLGRMRLEALSVKRSRITHSSPVRRGVETVGI
Ga0075421_1000816864F032948AGGAGMAQLQQNSPGRYVMKDLYLFSCKREILARKLETLPITIPLKPIRPETALRRALSLNLDQKRYTFEESSFEKVNDKPVQIILSREALGNGDTDAGVGKAYVERGRLEVNTIYPEIRTSLENGFRFHMETAITRDLSIVVTKYLIACMGIPVRPKNGEIYFALERYIPEVLELMTAIDGLGQESTIRVSPVVGDEVQKVVERAHDHFRTSVETLMRLTEEISDETHTKTLNTRLKDARDLLEQATAYEIGLGMELDEVKAKIEAAKARIAKRLLVKPAVTNTPEQTTPAPAFLARSSGQMNLI*
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