Scaffold Ga0075428_100032224

Overview

Basic Information

• Taxon OID: 3300006844
• Scaffold ID: Ga0075428_100032224
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5788
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002124	Metagenome / Metatranscriptome	591	Y
F002802	Metagenome / Metatranscriptome	529	Y
F103576	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075428_1000322241	F103576	GGA	MISEHDRQFLTRLPVWNPAGDIAAQRRAWEELAKVFNHDLPSIGCLEE
Ga0075428_10003222410	F002802	GAG	MTDFAFEPPLRLAREVTVRTLDDAAEFARTYVGPRLPHRRDRLVRRLEEISDDASARIAARAFRAWAIAEGLLAEEC*
Ga0075428_1000322242	F002124	GGA	MADQNEAKTKTIGYLPIEKVQTLKGWDEYLDKSTQLSVLRTEAQKAKNAVRDALKERLNDYGDIDFVGEGDRIRVFRVFRKQQARRTRSLDLSASFREQPLDGKAETNGQCNDEAVCEESDDATPNANPITEDVAATLDPVTERLMAIMREKGQR*