Scaffold Ga0068489_111055

Overview

Basic Information

• Taxon OID: 3300006841
• Scaffold ID: Ga0068489_111055
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT234_2_0200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1815
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024414	Metagenome / Metatranscriptome	206	Y
F032033	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068489_1110551	F024414	AGGA	MGTRLKEIIFDKQEDLLYEDERAMALTHYVMAERCIQVQMKDIHEEYGAGDYDTLTYILEGGFKGFHNMEPSELIKEYKDYEDRW
Ga0068489_1110554	F032033	GGAG	MERIWEKDYGPFRAFGYVAPEEIDVAEIFENDADNVDEIRDDIYRGNKVWVWAQVKVYCKGIELGDSSMGGLLYKDYDGIKKEVFEEDTHDIVHEALKGARASMKYLREVKIPSQEQLTSQFMEGQVY*