Scaffold Ga0101790_103057

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0101790_103057

Scaffold Ga0101790_103057

Overview

Basic Information
Taxon OID	3300006840 Open in IMG/M
Scaffold ID	Ga0101790_103057 Open in IMG/M
Source Dataset Name	Anaerobic bioreactor microbial communities from Canach, Luxembourg
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Centre de Recherche Public Gabriel Lippmann
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10636
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (96.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Anaerobic Reactor → Anaerobic Bioreactor Microbial Communities From Different Locations In Luxembourg

Source Dataset Sampling Location
Location Name	Canach, Luxembourg
Coordinates	Lat. (^o)	49.609581	Long. (^o)	6.325797	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045597	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101790_1030574	F045597	GGAGG	MRFTVWITKPPTLISDSAGHGSRRTYAAVARVRCQGKGFMDVVAVYSLGYCDQHEEVESLDRLLSLLVVNAPVNNPEVTLAQFPEDLPAGWEEAWEAVEEAVLTLPE*

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