Scaffold Ga0070754_10220548

Overview

Basic Information

• Taxon OID: 3300006810
• Scaffold ID: Ga0070754_10220548
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 876
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026509	Metagenome / Metatranscriptome	197	Y
F035121	Metagenome	173	N
F037989	Metagenome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070754_102205481	F037989	AGGA	MKALFAFGILAIILALSTDTPTIEDEVAEQIEESQKLYDSARVELKRMRKINDSLLELRFGK*
Ga0070754_102205482	F035121	N/A	MRFPVTFEQFTKNSEKAITYLLLFVVTALYIRAERQSNLATAQCEKRLIKCETELRKMSTMLKTQDSLCSALVTEIKIYKALGKI*
Ga0070754_102205483	F026509	N/A	MQGYKFQNEQQAIKARKDAADYMGLPVPNGETLYWVNYSYSDLDGFYYIQYVEGLEAVLGQPTDITITPHEEI*