Scaffold Ga0070754_10051408

Overview

Basic Information

• Taxon OID: 3300006810
• Scaffold ID: Ga0070754_10051408
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2176
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F023856	Metagenome / Metatranscriptome	208	Y
F056585	Metagenome	137	N
F073499	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070754_100514082	F073499	N/A	MTTEQELEQWIRDNPWKANVIYPVGGIGFMMFIMYTCMQIIDSFLTGTIV*
Ga0070754_100514083	F001655	GGAGG	VNMKQPDNAHTKMFGNDGPIGNDAEIIVYYEQHGPAEPVLRIPFWYCKDELGLYENFEASVHRTAKALKESYTYWPEGYVHVQTIINDEYVNMI*
Ga0070754_100514087	F023856	AGGAG	MRCRACNRILEETELTKKDTHGNFLDLCGNCLSASAFSGLDSDTMEYYQYEIFTEDEKYDTLY*
Ga0070754_100514089	F056585	GAGG	MTRETWEMWADEYQEYYEDETPVYPDDIEEWKQEEQRVINEVIQAMKGLQS*