Scaffold Ga0070754_10007117

Overview

Basic Information

• Taxon OID: 3300006810
• Scaffold ID: Ga0070754_10007117
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7359
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002985	Metagenome / Metatranscriptome	515	Y
F013402	Metagenome / Metatranscriptome	271	Y
F015201	Metagenome / Metatranscriptome	256	Y
F058089	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070754_100071171	F013402	N/A	MSTQLQQQELNAAQSLIYTRTNIGRAFQDFDDTEIAGIYLRDDNCLVVRRDGTEQTYPRELIKLAFTNYTNRLKDFFSYLGPNYRGPSVWHNNAYVLFKGWHHAHALGHLTSNAKLQTHWADRFIHVTDPTKVITLLQSDQTDIGHLVAPDGMRLPNRPLDLGSDMETQESDVPAVTPEPYCSCGSFQRQLLNVSEFQAEIQGFKPWCIHLSWFGKYR
Ga0070754_1000711711	F015201	GGAGG	MNKALIVYLVNQKKKQARKDVESKHAVTELKKQNAATF*
Ga0070754_100071175	F058089	N/A	MSTQPEDQFTLLYEDGKRKVLHEFQGIGTDEIVDEFINFLRGAGHLELNIIERMYEISKQYLVLYQGEPAVQLPIQQDELEEVE*
Ga0070754_100071178	F002985	N/A	MSYVIACWQWGTPHAITANKESNKFELIPLDSEVALNKIFSHPYRAGAQQILTWINSNDEDLACKELSIQDESRFRK*