Basic Information | |
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Taxon OID | 3300006805 Open in IMG/M |
Scaffold ID | Ga0075464_10152862 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1356 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000645 | Metagenome / Metatranscriptome | 962 | Y |
F004115 | Metagenome / Metatranscriptome | 452 | Y |
F009683 | Metagenome / Metatranscriptome | 314 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0075464_101528621 | F009683 | GGAG | MSERSLSDWLSDAGNTLDDRGIEYGDPRFNLLRIYKIARQLGVQLRDPADVALVFIATKLSRMVESPEREDSYLDLIGYSTILGFCRFSTPEDWDDVESDSEL* |
Ga0075464_101528622 | F004115 | GGA | MTLSLTRNYNQHQWCDACKSRYGQMKDGTWHLKAQTPAVWKVQSETPIRKAQVRFYCQPCADEVQNWPDGTFWSLKEQLEMAIDEFAGREKLNVQLP* |
Ga0075464_101528623 | F000645 | GGAG | MSNYLDDYVSVQDRLKEFINAFPDYRIKTHVLEESLTPNCDVYIVKCELYRTEADAAAWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKPSPSPKKPIQTTKPELAEFIKETRPKDPEPIVWDVTAIAEQFGAEVIDEVPLCAEGCGPMILKQGTKEGKEYRGWVCPRPKSGHPAKWMRIGSDGKWVFQK* |
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