NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075464_10096622

Scaffold Ga0075464_10096622


Overview

Basic Information
Taxon OID3300006805 Open in IMG/M
Scaffold IDGa0075464_10096622 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1692
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003304Metagenome494N
F011281Metagenome / Metatranscriptome292Y
F020665Metagenome / Metatranscriptome222Y
F022371Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0075464_100966221F011281GAGGMSEFKQKVLTASVDRYVLTKTQCEMLRQDAEVIGMKRATVMKKDGTTRRSFARSCSSCWVPMAPHYKWLYSIVNELTTAVNAEHYRF
Ga0075464_100966222F020665AGGAMRKKNRKITLVKTLEQKAVRVMLDVDDDLYEALARAGRQHFAKDKMACFEYALNKALLELCEELK*
Ga0075464_100966223F022371AGGAMFCLLDLAGVVWVIGWFVLYSSLTLSAVYCAGYLIFKLIEIIRKELDR*
Ga0075464_100966225F003304AGGAMKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHSCDFILIDKPLTHPAQYSKSAIGNIMATKGYSQVTFVDADVLIAADCPKLSEDAGVFCAFDEGAYLDRKPEMVKLAGAFGGMIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLTRLSNQIKADEAKLVELGR*
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