Scaffold Ga0075464_10051046

Overview

Basic Information

• Taxon OID: 3300006805
• Scaffold ID: Ga0075464_10051046
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2282
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004667	Metagenome	428	Y
F009514	Metagenome	316	N
F017297	Metagenome	241	Y
F048999	Metagenome	147	N
F093536	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075464_100510461	F093536	AGG	MQTTPNNFHSMRGHVADGCVILSPSGKQFTLKNTLKGWIVYGADNLPISGHLPSAYDVEYFVVNGLQNS*
Ga0075464_100510462	F048999	AGG	MLTISLHQKTDNDGWQTIKSLPIDSVQWGKFDRSWIDTLMQSGSMVITIGHTMYSIDKN*
Ga0075464_100510463	F009514	AGG	MTKQQILALQSIGKGIIEAANIDSIGAPSGVIYSALMSHGATFNQFQQIMSTLVRHGFLSHDDDSSTYHATEAGLQWANKV*
Ga0075464_100510466	F017297	AGG	MKITEQKNGNYTTFERVSHNGYYIVKLYKRGELADKIMTDTYRAARDYLRSFNLIAKNG*
Ga0075464_100510467	F004667	AGG	MARPPKVDTIQFRRKLDNPKLQILLSAGQGNISHGFENLLILYQHLHCLGYRTDSPLESIGLVTNLSEKKRDSHNPSESVGNDIRNV*