Scaffold Ga0075464_10020126

Overview

Basic Information

• Taxon OID: 3300006805
• Scaffold ID: Ga0075464_10020126
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3445
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024785	Metagenome	204	Y
F032279	Metagenome	180	Y
F093869	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075464_100201265	F093869	AGG	MSLRTGAKLENEALHARLVFIVGVTMAITFAIMVVGLLFGMLFVNMPAELSPLDGSIVDLLSTISVFLTGALSGLVASNGIKKNPKSETE*
Ga0075464_100201266	F024785	N/A	MKPYTVNAAPVVAKPLAGMDIWVSRAVYHSDKSLWNNGTWVVRDVRGKPGIVSNHAKGVACDISYRWISATSKGRQDGRRVSLAYINKLLENADTLGIELVIDYALNRSWKCDRATWKGGTFENGDWWHVEVNPVICNSPELAKQAWDKVFGLIPAVIKKPV*
Ga0075464_100201267	F032279	GAGG	MHFIIKLTIAFALSAIGVGVSQIPQPQPDMSSTTPTDKPYDALGGFGQAMADIYRYVPPVTTTTPPAPVYRHGDCSWLPAVALQAGWQPEQIPQLTKYALRESGCCPNRVGGDTVDKDCNITGVAEWSHRSDSGLLQINGVHWKPDHPQYDGLICKQMKICTQKPLLDALTNLRAARLIYIRVGWSAWGN*