Basic Information | |
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Taxon OID | 3300006805 Open in IMG/M |
Scaffold ID | Ga0075464_10012558 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4211 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (16.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F041777 | Metagenome | 159 | Y |
F045753 | Metagenome / Metatranscriptome | 152 | Y |
F049635 | Metagenome / Metatranscriptome | 146 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0075464_100125582 | F041777 | N/A | MKKTLLYIALLFGAMLIAGTIDEQTRILEQQPNHTIK* |
Ga0075464_100125585 | F045753 | N/A | MYCPKITYCFNDDDIRTLNERIKAIANNYNDDETGWFEVDEKQHLVFIDDLDNMYTINLRGRFFRSDDPEFDLDFVTLEKDGISFSFDVNIFDDHI* |
Ga0075464_100125588 | F049635 | N/A | MNKEIYKTPFGRLVKSQFKTMHNFKNILRISDPTARLYVAHPERMRIKDFNNICLHTGLSREEVFSTFTPTKLINEEND* |
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