Scaffold Ga0075464_10005487

Overview

Basic Information

• Taxon OID: 3300006805
• Scaffold ID: Ga0075464_10005487
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6016
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F010673	Metagenome	300	Y
F085601	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075464_1000548710	F085601	N/A	MKYYVMQTALASDSKPQLVHWSKSQADAVAYAQSQLDLWREVGVPNPPRYEVHYSGLRNPIALWSSLD*
Ga0075464_1000548715	F000922	AGG	MKGKAWEKAKSLYLAGKSWKAISNETGIVQSTLQSKASRDDWTKFRKGMRDIVSTKETQSLESLSTLVRSKLAADAASTLERIENYELDGIKDESVRESILGSVAKRSALVFGWLEQGEQASVSINLLGSMPDRFAEVVVHGDSAGATVR*
Ga0075464_100054874	F001964	GGAG	MSRNLFAKPVYKVQLSGAIGWSDMKEKVVSYRAVEFASRKDAEKAARELNPGEYTQGRIRVVPVELSEDYDVYPVVERMSEKPKQI*
Ga0075464_100054875	F002227	N/A	MKLTIQSKQNAQTIVDLFNAILTGEEAENGATPLSIYDDNKHICSLIAKDGHQILELIIEREEGDKLCPGTPDLETL*
Ga0075464_100054879	F010673	N/A	MNPKLIPILERIIARETILLSFHADNLPQAALAYVRHTYVMCRSLSWEEHDLIETLAPFADNIADSFREGNAPDDSVYHLFEDGSLWLKTNAYSSIWADATDFAVEILLPRMTLNPMDADLLRAIEMDDAVESVRDDFYSSFAHILNRDCGIPYCDAREHWNAYSRQLSDSACEAVVLGGSESGRKEGKRFASEYTVNA*