Basic Information | |
---|---|
Taxon OID | 3300006802 Open in IMG/M |
Scaffold ID | Ga0070749_10193618 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1167 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002317 | Metagenome / Metatranscriptome | 571 | Y |
F003661 | Metagenome / Metatranscriptome | 474 | Y |
F005704 | Metagenome / Metatranscriptome | 392 | Y |
F010026 | Metagenome / Metatranscriptome | 309 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0070749_101936181 | F010026 | N/A | KSKTALGRVEHKPGKPKRTSIGQGQHSRPRNRKKLRGQGKG* |
Ga0070749_101936182 | F005704 | AGG | MDKRVSLIGAAFALLTTVIGTTLAIDSRYAKSEEVKQQFCQARKQQLRDRIFELDLKSERTASDRALREYLQQQLRDGC* |
Ga0070749_101936183 | F002317 | AGGGGG | MESNEEAVYHAVPPKTPWDQAVPALLTAAVLGLGGLFMQVAKLDQSVSTVAQDIQELKNDSKERLSDLEGRVRQIEMIVGRQR* |
Ga0070749_101936184 | F003661 | N/A | MDPTTAAIVAIVIAAGSEIITLLPIKENSWVQLILKALKVVFPKR* |
⦗Top⦘ |