Basic Information | |
---|---|
Taxon OID | 3300006802 Open in IMG/M |
Scaffold ID | Ga0070749_10026302 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3656 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003805 | Metagenome / Metatranscriptome | 467 | Y |
F004722 | Metagenome | 426 | Y |
F006109 | Metagenome | 381 | Y |
F017122 | Metagenome / Metatranscriptome | 242 | Y |
F043896 | Metagenome / Metatranscriptome | 155 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0070749_100263023 | F003805 | GAGG | MRPIEHSTESQFHKAAQDKWLVDLFNKQDYRGLLEAALVLNTLHQLERTKSAWAIREAAENLADQFGLDRDSA* |
Ga0070749_100263024 | F043896 | GGAG | MSKHEIADWAHKNWGQVIVDQARVDLLEKLYEWDGRANPEHPLHHTYTGLYQQYNQR* |
Ga0070749_100263025 | F017122 | N/A | MEVIPFQQQSDPDLRLGEGRSRTSAEKTALFELKIWLPGQGAMRDLIRAESLQQALLFAQNRYPNCKVEVPDATAKKPKLVRSTRGPKETARRNLKLVEQKNEQA* |
Ga0070749_100263026 | F006109 | AGTAG | MTRYVVMVEDRWVTAVYGPGKGIGLTASKEDASSWVTYERAVAAARTVAECTNSNVAVHSIEEPVYFKSWK* |
Ga0070749_100263028 | F004722 | GGAG | MKEIRYAKTSDLHRAAAFLEWARDIRKGCTKQRSSARVAQSNAWRKGLDEDVRWRV* |
⦗Top⦘ |