Scaffold Ga0070749_10026302

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10026302
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3656
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003805	Metagenome / Metatranscriptome	467	Y
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F017122	Metagenome / Metatranscriptome	242	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_100263023	F003805	GAGG	MRPIEHSTESQFHKAAQDKWLVDLFNKQDYRGLLEAALVLNTLHQLERTKSAWAIREAAENLADQFGLDRDSA*
Ga0070749_100263024	F043896	GGAG	MSKHEIADWAHKNWGQVIVDQARVDLLEKLYEWDGRANPEHPLHHTYTGLYQQYNQR*
Ga0070749_100263025	F017122	N/A	MEVIPFQQQSDPDLRLGEGRSRTSAEKTALFELKIWLPGQGAMRDLIRAESLQQALLFAQNRYPNCKVEVPDATAKKPKLVRSTRGPKETARRNLKLVEQKNEQA*
Ga0070749_100263026	F006109	AGTAG	MTRYVVMVEDRWVTAVYGPGKGIGLTASKEDASSWVTYERAVAAARTVAECTNSNVAVHSIEEPVYFKSWK*
Ga0070749_100263028	F004722	GGAG	MKEIRYAKTSDLHRAAAFLEWARDIRKGCTKQRSSARVAQSNAWRKGLDEDVRWRV*