Basic Information | |
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Taxon OID | 3300006802 Open in IMG/M |
Scaffold ID | Ga0070749_10024104 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3834 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (16.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F015587 | Metagenome | 253 | Y |
F019817 | Metagenome | 227 | Y |
F021097 | Metagenome | 220 | Y |
F091979 | Metagenome | 107 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0070749_100241041 | F091979 | N/A | IAGRFAIGNSPFLQGWQQEYMKAHGSMPPQDKVMDFLTSVVRNESIPMQNKQAELRLLDQMQRFAPDIRNVVR* |
Ga0070749_1002410410 | F021097 | AGG | MQRNEFADACIAMTLGIGAGMLLSVFGQKLLNQYYRNTCHNHPGHNLIYTKGFLGDTYYCINAKYVN* |
Ga0070749_1002410411 | F015587 | N/A | MTALNIRKNTAQLLLATAAAVENAKMPTKAGMVEKLNEYRTRAAALIMPNDMAFVITPKQGN* |
Ga0070749_100241042 | F019817 | N/A | MLSQEQIKLPTLTINQRNIYMYFLNHRKKYKTAPCFVPKCPTQNGIQIYLNALIKLEQYGLMRVDRNSDNYTGWIMLEPKAN* |
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