Scaffold Ga0070749_10003852

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10003852
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9992
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (21.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006215	Metagenome / Metatranscriptome	378	Y
F038642	Metagenome	165	N
F085402	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_100038521	F038642	N/A	YITKAGTPELIITGREKVTVSPVYYLLVFESEMSQEQKAFIVTDTSTAPNRYQLFSFVEGSSTAKTLAVGTHYWALYAQTSPTNTNPLLASQEIDRGLAYVTASHTAFNDHEVNTTIKQHHIG*
Ga0070749_100038527	F006215	N/A	MAFINGYKFTTEQEAINAREACDAYYGIPVAPDDVTQNWVDYRFAGLNTPPFWYIIFDESLLPVLGQPTEFEVIEPSYEI*
Ga0070749_100038529	F085402	GAG	VAAKAKAKIGQTYQISQQTQISKTIQRTRKMKFKNYFQPTPKRFRVLGDSIAAASLFIAGLNLDNPKLMLISGVCGAIGKFVTNFFAEDEAK*