Scaffold Ga0070749_10000388

Overview

Basic Information

• Taxon OID: 3300006802
• Scaffold ID: Ga0070749_10000388
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29620
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (80.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004761	Metagenome / Metatranscriptome	424	Y
F048262	Metagenome	148	N
F048959	Metagenome / Metatranscriptome	147	N
F058086	Metagenome	135	N
F069861	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_1000038823	F048959	N/A	VRKQEPTLEVSLTLSELRAVIKSLAIGVDQLAKKIQRFAMDERIDSVHTELTEILSAKHEMETVLTLALQGDSA*
Ga0070749_1000038830	F058086	N/A	MTSKSFVCIWRRHDKDNVFYWHTRHSNVVSRMKESRWDFPAERRYNFSDDLKFGKKGEELTRDFLQSIADGSFEVKTDRYRNGRMVVETEQNPRGTGWKPSGLEVTEAKWWVYIYCLDGAMLAVSVERLKRYIATLPKNRMKTFAWNSANPAKGFLLLPEEVMDMMINPEYDSEE*
Ga0070749_1000038831	F048262	GAGG	MAGALEPIAESVQELQPLREAVADCIEKLNEQDQFIVNALNSEMISLQKLGERLGVSKPHAWRLRNAAYERLALHLRSHPYIQGRFNLDEDESGNSGI*
Ga0070749_1000038834	F069861	AGGAG	MAKKRVYTGNKDGAAKGLRPGMRVFINQTIKLSNGALWNNGDFGVRNMRSKSSLSVHATGRAVDLSYRHMPPRKGIKNGRIEALRVLKIIIANADALGLEAAFDYIVKPHGRGWMCNRGVWLKYKKKTISGGGSGDWIHFEISPDMADNPEKMKQAFSNLVIPAESPKSPE*
Ga0070749_1000038842	F004761	AGG	MISLNTLRTQVRSMADLDEEDLPDVVVDQFAREGFQRIYALERRWPYLQESYNFNTVAGQREYTISTIGDIREIISVLDTSSSGARLTLIPYDNAEEIWLGNTDVPSRPYFYSFWDKKIQLWAKPDAVYPITVRAYRNPVYTWLTDTDEMIDLDEWFHALLPYFVLGRVYQRQEDAQLAQMHLNSFEQGVGLARRDLMKASSAQPVIMSGGRQYPTMRRWLQTLGATIGQ*