NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066665_10282563

Scaffold Ga0066665_10282563


Overview

Basic Information
Taxon OID3300006796 Open in IMG/M
Scaffold IDGa0066665_10282563 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1327
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026389Metagenome / Metatranscriptome198Y
F029879Metagenome / Metatranscriptome187Y
F057229Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0066665_102825632F057229AGGAMNRKWKRSLDRVLQEGEMFGLVFMALMLIVIEGCLVYWLHHLQFPERPVSPLGFLVMPPWYQKPRFEVTLLLTIAAGTLFSACRGLCHVWRERDRAVSVENIQSLRRRLTTAASVAALAGFNLAIATWLR*
Ga0066665_102825633F029879N/AMLEDWTLSEAQLLERLRKRSAIFADIIVEQPVMLQDVDMEFRAARRKRADLGLLNHTLNLFLEPRNPFEPQRMRKPKMEATVFGALLALVVIALLAFNLAAPRP*
Ga0066665_102825634F026389N/AGSSKNHQKVEIIVEDIYRKDGRVFLRYAISNGGRTVYLPAAPAVFTLRSPRAPQSLITLANRQLADDIQLRWNGEAAVPVVHAELQAPIVKPGQTAHGLVAFDLPSQNSQPGGRTVVKLRFPEDGVNSVSAVLVL*
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