Scaffold Ga0098055_1307028

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098055_1307028

Scaffold Ga0098055_1307028

Overview

Basic Information
Taxon OID	3300006793 Open in IMG/M
Scaffold ID	Ga0098055_1307028 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	592
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053336	Metagenome	141	Y
F054095	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098055_13070281	F054095	AGGA	MIPQWKMNGKDMRFNGDMEIGIIEVRDLFDDLVVTLWVDQEDSGSITVKSLGGVGNGRYDVQVVARKKPVEEGEEWKS*
Ga0098055_13070282	F053336	GAGG	MTEYFEYLTDLRDGGSMNMMWGPTMLQSRFDLSVKESREVFSKWCKSLEGN*

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