Basic Information | |
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Taxon OID | 3300006793 Open in IMG/M |
Scaffold ID | Ga0098055_1026069 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2451 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Oscillatoria → unclassified Oscillatoria → Oscillatoria sp. SIO1A7 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.51 | Long. (o) | -76.2 | Alt. (m) | Depth (m) | 15 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F053312 | Metagenome / Metatranscriptome | 141 | N |
F095519 | Metagenome / Metatranscriptome | 105 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0098055_10260691 | F095519 | N/A | INECCLNDIKKREQKSQDIAEARKFFVGIMSLFILLAIVGNMEYNDCINLGVC* |
Ga0098055_10260692 | F053312 | GGGGG | MSYKVLNDAVGLIRDETPMWEGGFQELPCKTKDGLIALWLITHPTWMDDVFPHTVSDKPLLALEAVYSEDATSRMAAAMFRDAAERNAKDVDNDAYLSEALDDFEGILDSPDFLEEIREQIYLYLEPSMSELVMDSFADLCHLDRMIMGSH* |
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