Scaffold Ga0098055_1026069

Overview

Basic Information

• Taxon OID: 3300006793
• Scaffold ID: Ga0098055_1026069
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2451
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Oscillatoria → unclassified Oscillatoria → Oscillatoria sp. SIO1A7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053312	Metagenome / Metatranscriptome	141	N
F095519	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098055_10260691	F095519	N/A	INECCLNDIKKREQKSQDIAEARKFFVGIMSLFILLAIVGNMEYNDCINLGVC*
Ga0098055_10260692	F053312	GGGGG	MSYKVLNDAVGLIRDETPMWEGGFQELPCKTKDGLIALWLITHPTWMDDVFPHTVSDKPLLALEAVYSEDATSRMAAAMFRDAAERNAKDVDNDAYLSEALDDFEGILDSPDFLEEIREQIYLYLEPSMSELVMDSFADLCHLDRMIMGSH*