Scaffold Ga0098074_1025541

Overview

Basic Information

• Taxon OID: 3300006790
• Scaffold ID: Ga0098074_1025541
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1753
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F014465	Metagenome	263	Y
F073529	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098074_10255412	F005524	AGGAG	MDIGDRVQHFSTGSIGTVIDSVYSMGSDFQQMCVQWEDDKAPERDSWEMSHSLSIIPHQPYDFTISD*
Ga0098074_10255414	F014465	GGAG	MTRGKPMVGALVRDCSKIMKIVTAYMCDGKGEYIRFAGDGPTMWRPLDDFEILSMGD*
Ga0098074_10255418	F073529	AGG	MKIGDLVILRSGRYNFASNAKARWEWTEVIGVITDNSGHLDGTAEYRVYTVDGKHTWSHVDDL