Scaffold Ga0098074_1003132

Overview

Basic Information

• Taxon OID: 3300006790
• Scaffold ID: Ga0098074_1003132
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7024
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003423	Metagenome / Metatranscriptome	487	Y
F003693	Metagenome / Metatranscriptome	473	Y
F078756	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098074_10031325	F003423	GGAGG	MSEFEAPENGVKQMRETIDRKDESIKKLEAELASFKEKEMDLVFGQIGLSTDKGFGKALKQVYDGPVDAESIAQFAKDEYGYEARGQVQDEPQPEAAPVIQDDARARVAALDTNSTSDVPKDVMDQLGEIIAKGSAQDSIRAKLNIMEDGKK*
Ga0098074_10031327	F003693	AGG	MQVKSVLIDVSADASNSTSFQTDGLLLCGIKFPAAMTGTVISFDHSLDNSTWADVKETDGTDVSYTISAGDIIRLDPSGWAFASSGYLRITSDGTEAADRTIEVYLRRS*
Ga0098074_10031328	F078756	AGG	MSTTVGNLIDRIYREYLEPIDSVESYSYLTGGMDATTTTFNYEENMFSTEEEDALGAGAIIEINQELMFSKSLNAVTNEVTVQRGARGTTAAVHLAGDVIKITPAFPRKNVFDAVSDQIKNLYPTLFAVETLSTTSGTGYDLLG