Scaffold Ga0098054_1124081

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1124081
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 960
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015325	Metagenome / Metatranscriptome	255	Y
F028197	Metagenome	192	N
F093698	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_11240811	F093698	N/A	WTKPTDFMTTGKAFISKNGVVCFIYWDNDAEPDEKGNQWRMAKNPMTIKATQTIEG*
Ga0098054_11240812	F015325	GAGG	MTNKKWFVIEKTSYGTSGDNFAISKIADTVEQATTYKVHLEALNESKNKFYFVASDISSVVNKVVYHHNKSVDEKPLVLTDEVKDTSSEMPF*
Ga0098054_11240813	F028197	N/A	MDTDIIWLLLFIGYAIGLIPIAYFGIVGTNEATDYQNKLHKSFERNKKNEQL*