Scaffold Ga0098054_1048514

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1048514
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1629
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022285	Metagenome	215	Y
F034719	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_10485142	F034719	AGGA	MHRVSDKVWDYDLIDAERNAEWGGIHKLVTDHAVEKRVTAQEIAKRNAIFYNHREINKP*
Ga0098054_10485146	F022285	AGGAG	MAKIKQPQTLVKWGNKDVTILELFEKLDEFVCDPVRSMHEMDGDMYMSDYQKLSQAHWRIVHTLRELKGEVA*