Scaffold Ga0098054_1033125

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1033125
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2017
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036783	Metagenome / Metatranscriptome	169	N
F065669	Metagenome / Metatranscriptome	127	Y
F086976	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_10331252	F065669	AGGAG	MSKVVSPRVFIDTCESFFEEFGGHQRVIASAFAQYIHTNWDEYTGSYSDACGVRDILNNCYDLSIPEINVGQWSLYVHYNSNACYASKLVDRESKNGA*
Ga0098054_10331254	F036783	AGGAG	MEIVRQSYASHIDTRVYMDLGYGDMEVDVEEIEMVDGVMSGRAYCDRREIEMHLDHKDCQRALDKYEAEIDGLDAIHGEV*
Ga0098054_10331255	F086976	GGAG	MGGDKIPPIDPITGQFVRTLSGNKVYKTETELTKGLLNDEIPHELYVELIKVYHEAYEEAPEYGFTGVGCISFAESILQYHQDGVERRIRIPTLYDEYSFKQESNDE*