Scaffold Ga0098054_1021239

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1021239
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2583
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009460	Metagenome / Metatranscriptome	317	N
F051865	Metagenome	143	N
F054773	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_10212393	F054773	AGGAGG	MTKQENIISIVSEAVEKAWEGSSSAKEASEKYLVMLEQDDVLREEATRRHLERIAYLDVVAQPRGYRARLKRAAHQVVLSKGETSTPAVSLKNMAPAYAKDMFERWLLPNTGICLGDATGEDLEQAIMHETSRSRHHEGQRSFYSAIKARVTDDKVVRDVWNISEVKAEYEQALVE*
Ga0098054_10212395	F051865	GGA	MIKTTWVALMVFSSPYECADFIEKYEANLYGPVQCVIQREKSNTVRPKRKPTQENENG*
Ga0098054_10212396	F009460	AGGAG	MAKWDLSKLEDCASVGSHIDEDSSTPTQPTPLMLVMSIRRKADIMRMDAGRGPERLTIKQRAEEIMALCEMLEKKL*