Scaffold Ga0098054_1006882

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1006882
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4870
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049294	Metagenome / Metatranscriptome	147	Y
F083376	Metagenome / Metatranscriptome	113	N
F090244	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_10068823	F083376	AGG	MIRIYTDSETTKTIEALDLGRVLLGETKKYTVFIKNTDSEWPVHNIKIENTNPELRFEAPQTLEANEVKEVAVYWTPKLDSRKPLRTEFKF*
Ga0098054_10068826	F090244	N/A	MFIHFCMDIEARIFEKLDKIEDRINDLCIRLSAMEAEYNSHIGDMQRRQDRKLKRRDYTLVVMALGLTTVEVLRTLGVI*
Ga0098054_10068827	F049294	AGCAG	MAGNLRYYALGAYAGLIALWTATDQLALNETTSIALLAPIAILIGADYIKHKQDIE*