Scaffold Ga0098054_1001051

Overview

Basic Information

• Taxon OID: 3300006789
• Scaffold ID: Ga0098054_1001051
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14728
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067645	Metagenome	125	Y
F070003	Metagenome	123	Y
F078584	Metagenome	116	Y
F090993	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098054_100105121	F067645	GGA	VKVGDIVLLKEEYQIKGVYYGHGVITSITDYPEEGFVSHRIQWIDDFSFHGTHELELLSEA*
Ga0098054_100105137	F070003	GGA	MKIGDLVRFRNHMSSPHGIVLRIVDLPESPHPSQPERGAAYIEWACKYTAPGNYQLSILEVVNEAS*
Ga0098054_100105140	F090993	AGGAG	LKVGDLVQVLPAKIGYYIIIGRADMEDDYVGRVAYWDLHPLPSANFHYGGPMAERFIEVVSESR*
Ga0098054_100105142	F078584	GGAG	MKAGDIVIATEDTYTFDEGDVGLLVAVDRGQLDKDYRPFYYVQWNSCPNADPYRRDVNGRHIEVLYSSQSVPMVKA*