Scaffold Ga0098044_1096798

Overview

Basic Information

• Taxon OID: 3300006754
• Scaffold ID: Ga0098044_1096798
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1212
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F014465	Metagenome	263	Y
F029400	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098044_10967981	F005524	N/A	PEIPEKEKVMDIGDKVQHYGTGSIGTVIDSSYEIGTPLQQLCVQWEDDKAPHKDSWERLEALSIIPHTPYDFTITD*
Ga0098044_10967983	F014465	AGG	LRNLYLESPKQMKTRGMVMIGALVRDCSKIMKIVTGYKCSQRGEYIQFAGDHQTAWYPLDSFEILSLEE*
Ga0098044_10967984	F029400	GGA	MKIGDLVTFCPEAWGTPLEDRPLGIIMNVEKRWHPDGAMMVTAIFPGDDIPYSSNIKDFEVVNENW*