Scaffold Ga0098044_1024698

Overview

Basic Information

• Taxon OID: 3300006754
• Scaffold ID: Ga0098044_1024698
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2672
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F097137	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098044_10246985	F097137	AGGAG	MKKVIMSTIIFMLVCCGDAEATSKSSGEYVNQIEVPPIVKINLDDMTFTDAFKMQYRAKGEGHVFWWRGEQYTTNLAEITTIPDRFVARHVNDLGWVRNNDDPDDNCRSNTLDDCGVCDGPGKVTWFRDKDGDGLGTFMEWITSCTYPTTIEIEKYQAESLLEGGGDQGR*