Scaffold Ga0098039_1141411

Overview

Basic Information

• Taxon OID: 3300006753
• Scaffold ID: Ga0098039_1141411
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 824
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 210

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055656	Metagenome	138	Y
F082712	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098039_11414111	F055656	N/A	NMCIFGYFTYNFIQYRKREKYRTQELNHRVQCMLDEMERDYQASSKQAEEPVTNVFREHVIDEISKQRLIYDETTGRYIRLRQIK*
Ga0098039_11414112	F082712	AGGAG	MDPSKENNKKWEKVRIFNNYNDANDLRCVMLDNDDSGLLQVKVSRCGPEGSQFKVKRHYLRNSK*