Scaffold Ga0098048_1056284

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1056284
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1227
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021866	Metagenome	217	Y
F057326	Metagenome	136	N
F084082	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_10562842	F057326	AGGAGG	LKRFNNFAERTARQEISKICKDLQKANKKKEDDTWFEDDPKAVKEKDYGRVYHEPTIQPFTGGYSMLSDIMEKGGNNHLRYTAKHGSARDGVRYTYKKRKK*
Ga0098048_10562843	F084082	AGGA	MFKAMLLICSLVHGSGDGAQCFQLNDTLAPDGYTTEKKCRVRVKEMADMITSIIPYPHTIKYKCENKTRRTRIEKIQ*
Ga0098048_10562844	F021866	AGGAG	MQEIHLQETQLEYEPIHRKDIPWEQAVTKIENVLNDVCSEYERDGHPYYADSLRLHWRRILKG*