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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006752 Open in IMG/M |
| Scaffold ID | Ga0098048_1007404 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4066 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (25.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.509 | Long. (o) | -76.198 | Alt. (m) | Depth (m) | 48 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011489 | Metagenome | 290 | N |
| F013089 | Metagenome | 274 | N |
| F020174 | Metagenome | 225 | Y |
| F023580 | Metagenome | 209 | N |
| F030437 | Metagenome / Metatranscriptome | 185 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0098048_100740412 | F011489 | AGAAG | MNSGSRKGWNSFLTKHYSKLVRIARRWTDSPSDLVHHTYLRCIDKRFPDGENDNPLGYFVKAMYTEATRGKFKDLYHVTDADPKEQTFENDWTKAIQREQMQLILDRLSWFDRTIFSLYLQGWNMADVSRRSGVGESTLYRSLHITRKILKDVLRNGTKED* |
| Ga0098048_10074043 | F030437 | N/A | MNHSQEEIWVTGKLGTKETTGYRTSIWTPVDEDDLNDNRQKYIDAGWKSYCWTKGSAGYDKYFLSKLPKEEFKHLLMVENDYGYHTMFWNIDED* |
| Ga0098048_10074044 | F020174 | N/A | MNMNEIKEDVLKYWTWAQKEFEGEDIDRLIFEVESAVTNLNRHINNEFTRKAMGKTDMRSK* |
| Ga0098048_10074046 | F013089 | N/A | MGQSKIKTIQPNGTYDSQNGLMYKFEIQLESGDGGEVSAKSQDRWSVGDEVEFEVTPSKWGDKMRLSKPGFTPNQSKANNPDIQKRIDASWAIGHAIAQESDPEKILEAAEFLLSIRSTLISKL* |
| Ga0098048_10074048 | F023580 | AGG | MNNIKLFLIRNYGSTSTAAMVLDVTPNTVRNWCGRMPRNILKHLPEISETCGATYAEIVEEVLLCEREGME* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |