Scaffold Ga0098048_1003368

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1003368
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6503
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050677	Metagenome	145	N
F077802	Metagenome	117	N
F106087	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100336810	F050677	AGGA	MNGILNIPYLIDEAHGWIIVTRADIRKARLHPADFPKAYRTKGEELFALEEDCEMPKLLDKLNSNGVLYQINEKFITYDDKDNPRNWR*
Ga0098048_10033683	F106087	GGAGG	MKIKIPTPTFLEIQSELADWLMSSKLGDDVYSTMVEMNNNSEVYTDEGQDIFNNYYDYVEAFLLNFFEKEEDNG*
Ga0098048_10033684	F077802	AGGAG	MATELYPTDYVIVDSKTHKPLEGYESIYHYTSVIDNFNEKLMKEGYEYISMSELSDVDKNKFKQSIKQMEDFYNEN*