Scaffold Ga0098048_1002197

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1002197
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8224
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022016	Metagenome / Metatranscriptome	216	Y
F080496	Metagenome / Metatranscriptome	115	N
F087020	Metagenome / Metatranscriptome	110	N
F099879	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100219713	F022016	AGGAG	MAFDMFRLHKLADRLDAEAYEHAQWAIAEFYNLELKENEYGYEQDVCEVLTKEQIEEIDAYISENTQENMWHEPYTISALNSIVDRWYEEQEGDDQWSTISFDDD*
Ga0098048_100219714	F099879	GAG	MAKQRIEVPETITVHCTDNGQDVEMDYISQHNGVVRMSLQGMPLNFHHHRANIYIANLLGREFVMKL*
Ga0098048_10021972	F087020	N/A	MSYAEWVERYKGKQIDEVILEDHKVYLKQFKSWQIGNIERV*
Ga0098048_100219721	F080496	AGG	METWEKELDENMKSIRGSYESIMKTGYSIMGVMILIIGIEIGRLL*