Scaffold Ga0098048_1001875

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1001875
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9001
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (90.91%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009527	Metagenome / Metatranscriptome	316	Y
F060926	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100187511	F009527	GGAGG	LKRNAFPPSIVNLLLKEGQRWKVDGKMREALGTGIIPIVASARGGKTSLAYVMIDYVIKHTSRPVILDSFPQKVINEGIPEHWQGRVSNQKFSDLALINEPAVWLLDDNAVHYNSRDSMTNSSKLLARAAGVLSHFGGGMTVIFTTQLLSGIDLSFLRFTTLAPVIRYIDADVINQERKEWRGIVEQGQFELRKICQDYRYRDYFYCSKDSILCPAPFPDFLNKELDPVRADYLSRPMRYHEEKDRVAMITGEVKRAKKGRPKKVDEENKKSVMLGFEDAI*
Ga0098048_100187518	F060926	AGG	MATWQTQAKNVAMTIAVLSGIVMALTIGIGEAASVVLDPNDPTDPLDANTTAVFGGTPDLVDRIAVLGVFVLILGSAGLGIIGPTGNPPFINNLVRWMPIVVGLIAFTAFSTEVFDIIQGDRDWSTYSDGQNSYMLFLASSFVAGLLSLFRR*