Scaffold Ga0098048_1000509

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1000509
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18442
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (90.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000913	Metagenome / Metatranscriptome	838	Y
F017163	Metagenome / Metatranscriptome	242	Y
F100035	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100050919	F100035	AGGAG	LIYYFTALVITYSMDAERITTSYILYDKKRHCQEALQGLADPIYNQIYELYEGTMMQCVVSDKVSYVLKPKLRPENG*
Ga0098048_100050930	F000913	AGGAG	MKHWELEHNGDYLRIEWNESATFNLQTPIQGQWVDYHCFTCYGIDNEQEALEHAMEVLEGVE*
Ga0098048_100050931	F017163	AGGGGG	METITLELPEFWATALFYDDTSGFEYEDEKPFQEFCQWAVKNYGTSEPVDMDEEPQFMRYHDAERFGVLACNVHCYTFIVNNGNPTTSAMTTLAHTMK*