Scaffold Ga0098048

Basic Information
Taxon OID	3300006752 Open in IMG/M
Scaffold ID	Ga0098048_1000496 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006752 Open in IMG/M

Scaffold ID

Ga0098048_1000496 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18684
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (23.91%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

18684

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (23.91%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.509	Long. (^o)	-76.198	Alt. (m)	Depth (m)	48
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.509

Long. (^o)

-76.198

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002321	Metagenome / Metatranscriptome	571	Y
F003188	Metagenome / Metatranscriptome	502	Y
F051049	Metagenome / Metatranscriptome	144	Y
F057295	Metagenome / Metatranscriptome	136	Y
F059880	Metagenome / Metatranscriptome	133	Y
F097317	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_10004961	F097317	N/A	MNVKKLNEYFASEFKMLDRGIVATPTSRDYLEKFANANGGSADLLLMQLAMNYGYKIA
Ga0098048_100049619	F051049	N/A	MTVLQSLDRLEVNYIKHMEKYNGYKDAGYVWWERIKDCQKWCNKEKTYVPMSNTETLKIMREWVKKQKSFDIV*
Ga0098048_100049620	F002321	N/A	MFRIELDREMAWVTFLGDGFETVWHPVTDASGKQLMWSEDIMDFCRAQFNVKECWVSFGIAPTSQMLVKNSVRDNM*
Ga0098048_100049622	F057295	N/A	MVKLIFLDGEYYQLVRDIKVEQVMGNMDGLKAWRDMLHCDHVLKYQGKYLMVRRVLDAEIIE*
Ga0098048_100049623	F059880	GAGG	MKKLHFENTDEFERVFKATDEEVTDAMVEGIQEAFTYHKKSAELFEITFEDADLVYEITLPSTQWELALETCLNHYRDLEASDKAIDTYLLQKDIRKWLS*
Ga0098048_100049632	F003188	N/A	MKSQKEDIRTILKSRLNISYRIKIKQPDRETMNKKIFIKVINQLRKIEERKDFLAEEIGMDMTVYEDQFFSVIENLFKLAFNKSQLGLIQMYLYQLVPDKDWDGTITIEHDKLEKTVPFKSADEVWEVIKKFNK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098048_1000496

Overview

Ecosystem & Geography

Associated Families

Sequences