Scaffold Ga0098048_1000049

Overview

Basic Information

• Taxon OID: 3300006752
• Scaffold ID: Ga0098048_1000049
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57803
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (73.96%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007414	Metagenome / Metatranscriptome	351	Y
F047972	Metagenome / Metatranscriptome	149	Y
F079237	Metagenome / Metatranscriptome	116	Y
F096248	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100004925	F079237	N/A	MLYIHVFNINNNIGERTMAANGISTLSLKKTRQDTKLAKAEAKRQGKSVADDGTISGSVDTNAVSYRALNTLNLGRLPTRYNASDNNGALTDNAGVPVASRPWS*
Ga0098048_100004945	F007414	AGGAG	MLFNGLVSLLGNPSPTRAFEKEMLTYAKTEYGSDWQYAYHYMMTHEGRGPRMGVKN*
Ga0098048_100004957	F047972	GAGG	MRFFEFTGTDETIDKYVILLKNIIGRAEMKKSPAKMNWAGLSNLALKNKIQLAADYETFKAIYDSSPAIQSLVKNFNADGIELDVPGAPDADPQSPQSDQSSQDAVDQTAASAAPQQLSQET*
Ga0098048_10000496	F096248	N/A	MVDVREQFSTYISEHANEVGFDMPTHISDYLIDLCADRLDKPELIPEPSFGERWLNLQELDRAYLFQEYADQCLFFVSLMPEYGKKRGLDIEYYASLGISSYYTVGDKIHDSTYIQLGNWFYHLQKFLNSAIRPKQRLILLDKYL*