Scaffold Ga0098040_1121068

Overview

Basic Information

• Taxon OID: 3300006751
• Scaffold ID: Ga0098040_1121068
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 782
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029745	Metagenome	187	Y
F040056	Metagenome / Metatranscriptome	162	Y
F077179	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098040_11210681	F040056	GGAGG	VQTQLDFRLGTLVRWNAGNTGEPGDIDELGIVIQMPGANWSGNYHISWCTSNTVSHHSPDMV
Ga0098040_11210682	F029745	GAGG	VASKAPRVGDVVKSRVTTESLAGYIVAKEGIHVWVRFFDTEFEAGSSWDVYTRRDTLEVLSRANPT*
Ga0098040_11210683	F077179	GGAGG	VKQHDYKPGDLILFFHGNSRFEEGPEEIGWIVRRDYDDPSEPAVMIAFPEPNKNGLLHYFDVELREWEKAGTIEVKRG*