Scaffold Ga0098040_1061324

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098040_1061324

Scaffold Ga0098040_1061324

Overview

Basic Information
Taxon OID	3300006751 Open in IMG/M
Scaffold ID	Ga0098040_1061324 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1159
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-11.499	Long. (^o)	-81.405	Alt. (m)		Depth (m)	120
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037679	Metagenome	167	Y
F079940	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098040_10613242	F079940	AGGAG	MTELTEIAIISLASGIAIGYLIGIVKHFADHNWRLDCIDLF*
Ga0098040_10613243	F037679	N/A	YCLDVAETHTIHNGAENMAFGTRIKKQRMSLGNSGSKRVERTRRNFGQRFHSKPMPVHIHFRAWTPEGEMVGVAQRNDEFMVALFDANERALAPPVCFSGSQARSQAARLASQLTGQKVSL*

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