Scaffold Ga0098040_1013645

Overview

Basic Information

• Taxon OID: 3300006751
• Scaffold ID: Ga0098040_1013645
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2738
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD12-C183 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065211	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098040_10136451	F065211	N/A	GFLLRANFCGSTAKRKKRNMIIQETSGGELPPKKPQNAVCVGVIDVGEAYGIDPGPDGRRMVPSSNKAHPEPKQKVRFIFESAEKMEDGKPFQLTRQFNVSLSDQGYLKPFLDGWGIELVKTGGGIDLEASCVGKCAKVNVTHDKDRNDPERIWANVSTVMPSDEDLKPSGEFDKADYLKKAAEKYAERQSGGVPY*