Scaffold Ga0098040_1001818

Overview

Basic Information

• Taxon OID: 3300006751
• Scaffold ID: Ga0098040_1001818
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8976
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016058	Metagenome / Metatranscriptome	250	Y
F025971	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098040_100181811	F025971	AGGAG	MAKIPMYGQEDGEGSALGGFALNGNFTIAVDGGLTLDGDGDGGIVLVEDADAHAIVLPTITKALNGLEYTVIMGVDAGGSITVTSTDSAGNYYQGALAVNQVDADDGFAANGTSNNIITMNATTTGGLLGSRVHVRAVYGYGWAVWGSVYGTNGTAATPFSG*
Ga0098040_10018186	F016058	GAG	MEEVKTNNVVEDSDTKVKEVIETLKAQLQEHLRQAEHHRTMATKAQGALEVLLQLHPQEENSEG*