Scaffold Ga0098040_1001754

Overview

Basic Information

• Taxon OID: 3300006751
• Scaffold ID: Ga0098040_1001754
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9157
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010950	Metagenome	297	Y
F030886	Metagenome	184	Y
F057352	Metagenome	136	Y
F070089	Metagenome	123	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098040_100175412	F030886	AGGA	MSYHGNPPDYMKNGIAVVNPLIRIERKLKRVQDILDNISDASILTATDLKIKIEKAMSEEDAK*
Ga0098040_100175420	F057352	GAGG	MKLWVLHGTYESEMFTSIHLTEKGCALAAIADVMDFLHVSDEESALQVMNECYAYRDTDGEQTEAFEWDHDKMKEMTSKQLWKIFGDWTETCWERMSDRSYWIDAIPQMVQA*
Ga0098040_100175421	F010950	N/A	MMKIWVVRQTSTYDQETYVTTHITEKGALMTAIKTVREDMCDGFDEDEMEDHRPGLPHDPEEDLARYDRRQLQGIVQDWWEYAWEINDELQYQIYETQVTT*
Ga0098040_100175423	F079212	AGGAGG	MNQHEKELIDRCIESHYNMIRMHRRAIIELSRKAIKEREWCEECFDLEIINESGRSGKV*
Ga0098040_100175424	F070089	GAG	MKVGDLVKFESALERDVFETDPRIEHGLVVQISKTGHDTTSAQVMFNDGSLWWVDSGRLEVISEGR*